Package index • excheckr

Checking one study

Run once per cleaned experimental dataset. Each check takes a study_id and appends it to the output, so results can be stacked across studies.

check_y_bounds(): Check that outcome variables are within [0, 1]
check_missingness_nona(): Check covariate missingness and imputed-version coverage
check_balance(): Check covariate balance across treatment conditions
check_smd(): Standardized mean differences between treatment arms
check_attrition(): Check differential attrition across treatment conditions
check_covariate_missingness(): Summarize and visualize missingness of covariates

Checking many studies

Collapse per-study results and read them without over-reading them. Balance p-values are uniform under a valid design, so a count of flags is the wrong summary; the distribution is the right one.

stack_checks(): Stack per-study check results into one list of tibbles
report_checks(): Triage a stacked set of design checks
summarize_check_pvalues(): Summarize a set of design-check p-values against the uniform reference
plot_check_pvalues(): Plot design-check p-values against the uniform reference

Data shape

Check that a cleaned dataset has the structure a pipeline expects, as distinct from checking that the experiment behind it was sound.

check_schema(): Check that a cleaned data frame conforms to its schema
assert_schema(): Assert a cleaned data frame conforms to its schema
assert_key_unique(): Assert that a data frame's row key is unique
assert_no_labelled(): Assert that no column is a leaked haven_labelled

Cleaning helpers

Utilities for building cleaned data, and code generators that emit copy-pasteable cleaning and checking blocks.

stat_mode(): Statistical mode
scale_by_control(): Scale outcome variables by control-group standard deviation (Glass's delta)
check_s_scaling(): Check that _s (Glass's delta) variables are correctly standardized
write_covariate_imputation_code(): Write covariate imputation code
write_outcome_missingness_dummies_code(): Write outcome missingness code
write_balance_check_code(): Write balance check code
write_attrition_check_code(): Write attrition check code

Package

excheckr excheckr-package: excheckr: Tools for Exploring and Checking Experimental Data